Software available in FGCI

Software installed to CVMFS environment of FGCI

• AMBER
• BLAST
• CP2K
• Conda/Bioconda
  
• Dalton

• GPAW

• GROMACS
• LAMMPS
• Matlab Compiler Runtime
• Molden
• OpenFOAM
• OpenMPI
• ORCA

Plus others. If you have access to FGCI participating cluster login node you can list software with "module avail" command.

Software originally installed to FGI but working in FGCI too

• EMBOSS
• EXONERATE
• MrBayes

FGCI/FGI Applications with command line interfaces;

• BLAST sequence similarity search tool
• Exonerate A generic tool for pairwise sequence comparison
• InterProScan Protein motif and signature detection tool
• SHRiMP short read mapping tool for NGS data ( including color space data)